3MK1A

Refinement of placental alkaline phosphatase complexed with nitrophenyl
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 39-356 318 1-38 439-481 357-438 38 43 slipknot
Chain Sequence
IIPVEEENPDFWNREAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKLGPEIPLAMDRFPYVALSKTYNVDKHVPDSGATATAYLCGVKGNFQTIGLSAAARFNQCNTTRGNEVISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQDIATQLISNMDIDVILGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEWLAKRQGARYVWNRTELMQASLDPSVTHLMGLFEPGDMKYEIHRDSTLDPSLMEMTEAALRLLSRNPRGFFLFVEGGRIDHGHHESRAYRALTETIMFDDAIERAGQLTSEEDTLSLVTADHSHVFSFGGYPLRGSSIFGLAPGKARDRKAYTVLLYGNGPGYVLKDGARPDVTESESGSPEYRQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTFIAHVMAFAACLEPYTACDLAPPAG
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 40-358 319 1-39 437-481 359-436 39 45 slipknot
view details
3.1 35-436 402 1-34 441-481 437-440 34 41 slipknot
view details
2.1 36-437 402 1-34, 440-481 35-35, 438-439 34 42 slipknot
view details
2.1 32-354 323 1-9, 359-481 10-31, 355-358 9 123 slipknot
sequence length 481
structure length 481
publication title Refined structures of placental alkaline phosphatase show a consistent pattern of interactions at the peripheral site.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Alkaline phosphatase, placental type
total genus Genus: 180
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2010-04-13
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3mk1A00
1HQAA 1AJCA 1URAA 2G9YA 1E1ZP 1ELZA 1EQJA 1ED8A 1KH7A 1N2KA 3SZYA 3M8WA 1EJJA 3M7VA 2ANHA 2GA3A 1SHNA 3IGYB 3UN3A 2QZUA 1KHNA 3T02A 3TX0A 1AUKA 1ANIA 1URBA 1ALKA 1E33P 3ED4A 3UN2A 3UO0A 1AJDA 1O99A 1ELXA 1Y7AA 3SZZA 1ZEFA 1E2SP 1AJAA 3M8YA 1KHLA 3MK2A 1EW2A 1ELYA 3MK1A 1KHKA 1ANJA 1HJKA 1ED9A 4FDJA 3IGZB 1EW8A 3CMRA 3T00A 1K7HA 1KH9A 1EI6A 1E3CP 1EW9A 1ALIA 1ALJA 1ZEDA 1HDHA 1KHJA 3M8ZA 2IFYA 3BDGA 3DPCA 1O98A 3MK0A 3NVLA 3BDGB 3DYCA 1P49A 1Y6VA 3UNYA 1ZEBA 3BDHA 1N2LA 3UN5A 1B8JA 1FSUA 3TWZA 1KH4A 3BDFA 1KH5A 1SHQA 2GLQA 3OT9A 4FDIA 1AJBA 3T01A
chains in the KnotProt database with same CATH superfamily
1HQAA 1AJCA 1URAA 2G9YA 1E1ZP 1ELZA 1EQJA 1ED8A 1KH7A 1N2KA 3SZYA 3M8WA 1EJJA 3M7VA 2ANHA 2GA3A 1SHNA 3IGYB 3UN3A 2QZUA 1KHNA 3T02A 3TX0A 1AUKA 1ANIA 1URBA 1ALKA 1E33P 3ED4A 3UN2A 3UO0A 1AJDA 1O99A 1ELXA 1Y7AA 3SZZA 1ZEFA 1E2SP 1AJAA 3M8YA 1KHLA 3MK2A 1EW2A 1ELYA 3MK1A 1KHKA 1ANJA 1HJKA 1ED9A 4FDJA 3IGZB 1EW8A 3CMRA 3T00A 1K7HA 1KH9A 1EI6A 1E3CP 1EW9A 1ALIA 1ALJA 1ZEDA 1HDHA 1KHJA 3M8ZA 2IFYA 3BDGA 3DPCA 1O98A 3MK0A 3NVLA 3BDGB 3DYCA 1P49A 1Y6VA 3UNYA 1ZEBA 3BDHA 1N2LA 3UN5A 1B8JA 1FSUA 3TWZA 1KH4A 3BDFA 1KH5A 1SHQA 2GLQA 3OT9A 4FDIA 1AJBA 3T01A
chains in the KnotProt database with same CATH topology
1HQAA 1AJCA 1URAA 2G9YA 1E1ZP 1ELZA 1EQJA 1ED8A 1KH7A 1N2KA 3SZYA 3M8WA 1EJJA 3M7VA 2ANHA 2GA3A 1SHNA 3IGYB 3UN3A 2QZUA 1KHNA 3T02A 3TX0A 1AUKA 1ANIA 1URBA 1ALKA 1E33P 3ED4A 3UN2A 3UO0A 1AJDA 1O99A 1ELXA 1Y7AA 3SZZA 1ZEFA 1E2SP 1AJAA 3M8YA 1KHLA 3MK2A 1EW2A 1ELYA 3MK1A 1KHKA 1ANJA 1HJKA 1ED9A 4FDJA 3IGZB 1EW8A 3CMRA 3T00A 1K7HA 1KH9A 1EI6A 1E3CP 1EW9A 1ALIA 1ALJA 1ZEDA 1HDHA 1KHJA 3M8ZA 2IFYA 3BDGA 3DPCA 1O98A 3MK0A 3NVLA 3BDGB 3DYCA 1P49A 1Y6VA 3UNYA 1ZEBA 3BDHA 1N2LA 3UN5A 1B8JA 1FSUA 3TWZA 1KH4A 3BDFA 1KH5A 1SHQA 2GLQA 3OT9A 4FDIA 1AJBA 3T01A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1HQA A;  1AJC A;  1URA A;  2G9Y A;  1E1Z P;  1ELZ A;  1EQJ A;  1ED8 A;  1KH7 A;  1N2K A;  3SZY A;  3M8W A;  1EJJ A;  3M7V A;  2ANH A;  2GA3 A;  1SHN A;  3IGY B;  3UN3 A;  2QZU A;  1KHN A;  3T02 A;  3TX0 A;  1AUK A;  1ANI A;  1URB A;  1ALK A;  1E33 P;  3ED4 A;  3UN2 A;  3UO0 A;  1AJD A;  1O99 A;  1ELX A;  1Y7A A;  3SZZ A;  1ZEF A;  1E2S P;  1AJA A;  3M8Y A;  1KHL A;  3MK2 A;  1EW2 A;  1ELY A;  3MK1 A;  1KHK A;  1ANJ A;  1HJK A;  1ED9 A;  4FDJ A;  3IGZ B;  1EW8 A;  3CMR A;  3T00 A;  1K7H A;  1KH9 A;  1EI6 A;  1E3C P;  1EW9 A;  1ALI A;  1ALJ A;  1ZED A;  1HDH A;  1KHJ A;  3M8Z A;  2IFY A;  3BDG A;  3DPC A;  1O98 A;  3MK0 A;  3NVL A;  3BDG B;  3DYC A;  1P49 A;  1Y6V A;  3UNY A;  1ZEB A;  3BDH A;  1N2L A;  3UN5 A;  1B8J A;  1FSU A;  3TWZ A;  1KH4 A;  3BDF A;  1KH5 A;  1SHQ A;  2GLQ A;  3OT9 A;  4FDI A;  1AJB A;  3T01 A; 
#chains in the KnotProt database with same CATH topology
 1HQA A;  1AJC A;  1URA A;  2G9Y A;  1E1Z P;  1ELZ A;  1EQJ A;  1ED8 A;  1KH7 A;  1N2K A;  3SZY A;  3M8W A;  1EJJ A;  3M7V A;  2ANH A;  2GA3 A;  1SHN A;  3IGY B;  3UN3 A;  2QZU A;  1KHN A;  3T02 A;  3TX0 A;  1AUK A;  1ANI A;  1URB A;  1ALK A;  1E33 P;  3ED4 A;  3UN2 A;  3UO0 A;  1AJD A;  1O99 A;  1ELX A;  1Y7A A;  3SZZ A;  1ZEF A;  1E2S P;  1AJA A;  3M8Y A;  1KHL A;  3MK2 A;  1EW2 A;  1ELY A;  3MK1 A;  1KHK A;  1ANJ A;  1HJK A;  1ED9 A;  4FDJ A;  3IGZ B;  1EW8 A;  3CMR A;  3T00 A;  1K7H A;  1KH9 A;  1EI6 A;  1E3C P;  1EW9 A;  1ALI A;  1ALJ A;  1ZED A;  1HDH A;  1KHJ A;  3M8Z A;  2IFY A;  3BDG A;  3DPC A;  1O98 A;  3MK0 A;  3NVL A;  3BDG B;  3DYC A;  1P49 A;  1Y6V A;  3UNY A;  1ZEB A;  3BDH A;  1N2L A;  3UN5 A;  1B8J A;  1FSU A;  3TWZ A;  1KH4 A;  3BDF A;  1KH5 A;  1SHQ A;  2GLQ A;  3OT9 A;  4FDI A;  1AJB A;  3T01 A; 
#chains in the KnotProt database with same CATH homology
 1HQA A;  1AJC A;  1URA A;  2G9Y A;  1E1Z P;  1ELZ A;  1EQJ A;  1ED8 A;  1KH7 A;  1N2K A;  3SZY A;  3M8W A;  1EJJ A;  3M7V A;  2ANH A;  2GA3 A;  1SHN A;  3IGY B;  3UN3 A;  2QZU A;  1KHN A;  3T02 A;  3TX0 A;  1AUK A;  1ANI A;  1URB A;  1ALK A;  1E33 P;  3ED4 A;  3UN2 A;  3UO0 A;  1AJD A;  1O99 A;  1ELX A;  1Y7A A;  3SZZ A;  1ZEF A;  1E2S P;  1AJA A;  3M8Y A;  1KHL A;  3MK2 A;  1EW2 A;  1ELY A;  3MK1 A;  1KHK A;  1ANJ A;  1HJK A;  1ED9 A;  4FDJ A;  3IGZ B;  1EW8 A;  3CMR A;  3T00 A;  1K7H A;  1KH9 A;  1EI6 A;  1E3C P;  1EW9 A;  1ALI A;  1ALJ A;  1ZED A;  1HDH A;  1KHJ A;  3M8Z A;  2IFY A;  3BDG A;  3DPC A;  1O98 A;  3MK0 A;  3NVL A;  3BDG B;  3DYC A;  1P49 A;  1Y6V A;  3UNY A;  1ZEB A;  3BDH A;  1N2L A;  3UN5 A;  1B8J A;  1FSU A;  3TWZ A;  1KH4 A;  3BDF A;  1KH5 A;  1SHQ A;  2GLQ A;  3OT9 A;  4FDI A;  1AJB A;  3T01 A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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