3OT9A

Phosphopentomutase from bacillus cereus bound to glucose-1,6-bisphosphate
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 7-326 320 1-6 343-391 327-342 6 49 slipknot
Chain Sequence
NKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGKISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFAKLKEDDLLLITADHGNDPIHPGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNEL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 5-327 323 1-4 332-391 328-331 4 60 slipknot
view details
2.1 6-331 326 1-5 339-391 332-338 5 53 slipknot
view details
2.1 5-341 337 1-4 345-391 342-344 4 47 slipknot
sequence length 391
structure length 391
publication title Bacillus cereus Phosphopentomutase Is an Alkaline Phosphatase Family Member That Exhibits an Altered Entry Point into the Catalytic Cycle.
pubmed doi rcsb
molecule tags Isomerase
molecule keywords Phosphopentomutase
source organism Bacillus cereus
total genus Genus: 141
ec nomenclature ec 5.4.2.7: Phosphopentomutase.
pdb deposition date 2010-09-10
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.70.1250 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Phosphopentomutase 3ot9A02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3ot9A01
3TWZA 1FSUA 1EI6A 1O98A 3NVLA 1HQAA 1E2SP 1KH5A 1ANJA 1EJJA 1URAA 1K7HA 1Y6VA 2GLQA 1URBA 1ED8A 1ALJA 1EW8A 1KHKA 3DYCA 3BDGB 1SHNA 3UNYA 4FDIA 1B8JA 3BDGA 3M8ZA 2ANHA 3UN3A 2QZUA 2GA3A 1KHNA 1E1ZP 3UN2A 1SHQA 3UN5A 3ED4A 1ANIA 1O99A 3CMRA 3T01A 3MK0A 1EW9A 1ED9A 1KH7A 1ELZA 1ELXA 3IGYB 1EQJA 1AJAA 3M8YA 1KH9A 1P49A 3DPCA 3T02A 1EW2A 1N2LA 1KH4A 3T00A 1HJKA 3SZYA 1ALKA 1ZEDA 3SZZA 1AJDA 3M7VA 1E3CP 1HDHA 4FDJA 1KHLA 3BDFA 3OT9A 1ZEFA 2G9YA 3M8WA 1N2KA 2IFYA 1AJBA 3BDHA 1ALIA 1E33P 1KHJA 1AJCA 3TX0A 3MK1A 3IGZB 3UO0A 1ZEBA 1AUKA 1Y7AA 3MK2A 1ELYA
chains in the KnotProt database with same CATH superfamily
3TWZA 1FSUA 1EI6A 1O98A 3NVLA 1HQAA 1E2SP 1KH5A 1ANJA 1EJJA 1URAA 1K7HA 1Y6VA 2GLQA 1URBA 1ED8A 1ALJA 1EW8A 1KHKA 3DYCA 3BDGB 3D7SB 1SHNA 3UNYA 4FDIA 1B8JA 3BDGA 3M8ZA 2ANHA 3UN3A 2QZUA 2GA3A 1KHNA 1E1ZP 3UN2A 1SHQA 3UN5A 3ED4A 1ANIA 1O99A 3CMRA 3T01A 3D7SD 3MK0A 1EW9A 1ED9A 1KH7A 1ELZA 1ELXA 3IGYB 1EQJA 1AJAA 3M8YA 1KH9A 1P49A 3DPCA 3T02A 1EW2A 1N2LA 1KH4A 3T00A 1HJKA 3SZYA 1ALKA 1ZEDA 3SZZA 1AJDA 3M7VA 1E3CP 1HDHA 4FDJA 1KHLA 3BDFA 3OT9A 1ZEFA 2G9YA 3M8WA 1N2KA 2IFYA 1AJBA 3BDHA 1ALIA 1E33P 1KHJA 1AJCA 3TX0A 3MK1A 3IGZB 3UO0A 1ZEBA 1AUKA 1Y7AA 3MK2A 1ELYA
chains in the KnotProt database with same CATH topology
3TWZA 1FSUA 1EI6A 1O98A 3NVLA 1HQAA 1E2SP 1KH5A 1ANJA 1EJJA 1URAA 1K7HA 1Y6VA 2GLQA 1URBA 1ED8A 1ALJA 1EW8A 1KHKA 3DYCA 3BDGB 1SHNA 3UNYA 4FDIA 1B8JA 3BDGA 3M8ZA 2ANHA 3UN3A 2QZUA 2GA3A 1KHNA 1E1ZP 3UN2A 1SHQA 3UN5A 3ED4A 1ANIA 1O99A 3CMRA 3T01A 3MK0A 1EW9A 1ED9A 1KH7A 1ELZA 1ELXA 3IGYB 1EQJA 1AJAA 3M8YA 1KH9A 1P49A 3DPCA 3T02A 1EW2A 1N2LA 1KH4A 3T00A 1HJKA 3SZYA 1ALKA 1ZEDA 3SZZA 1AJDA 3M7VA 1E3CP 1HDHA 4FDJA 1KHLA 3BDFA 3OT9A 1ZEFA 2G9YA 3M8WA 1N2KA 2IFYA 1AJBA 3BDHA 1ALIA 1E33P 1KHJA 1AJCA 3TX0A 3MK1A 3IGZB 3UO0A 1ZEBA 1AUKA 1Y7AA 3MK2A 1ELYA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3TWZ A;  1FSU A;  1EI6 A;  1O98 A;  3NVL A;  1HQA A;  1E2S P;  1KH5 A;  1ANJ A;  1EJJ A;  1URA A;  1K7H A;  1Y6V A;  2GLQ A;  1URB A;  1ED8 A;  1ALJ A;  1EW8 A;  1KHK A;  3DYC A;  3BDG B;  1SHN A;  3UNY A;  4FDI A;  1B8J A;  3BDG A;  3M8Z A;  2ANH A;  3UN3 A;  2QZU A;  2GA3 A;  1KHN A;  1E1Z P;  3UN2 A;  1SHQ A;  3UN5 A;  3ED4 A;  1ANI A;  1O99 A;  3CMR A;  3T01 A;  3MK0 A;  1EW9 A;  1ED9 A;  1KH7 A;  1ELZ A;  1ELX A;  3IGY B;  1EQJ A;  1AJA A;  3M8Y A;  1KH9 A;  1P49 A;  3DPC A;  3T02 A;  1EW2 A;  1N2L A;  1KH4 A;  3T00 A;  1HJK A;  3SZY A;  1ALK A;  1ZED A;  3SZZ A;  1AJD A;  3M7V A;  1E3C P;  1HDH A;  4FDJ A;  1KHL A;  3BDF A;  3OT9 A;  1ZEF A;  2G9Y A;  3M8W A;  1N2K A;  2IFY A;  1AJB A;  3BDH A;  1ALI A;  1E33 P;  1KHJ A;  1AJC A;  3TX0 A;  3MK1 A;  3IGZ B;  3UO0 A;  1ZEB A;  1AUK A;  1Y7A A;  3MK2 A;  1ELY A; 
#chains in the KnotProt database with same CATH topology
 3TWZ A;  1FSU A;  1EI6 A;  1O98 A;  3NVL A;  1HQA A;  1E2S P;  1KH5 A;  1ANJ A;  1EJJ A;  1URA A;  1K7H A;  1Y6V A;  2GLQ A;  1URB A;  1ED8 A;  1ALJ A;  1EW8 A;  1KHK A;  3DYC A;  3BDG B;  3D7S B;  1SHN A;  3UNY A;  4FDI A;  1B8J A;  3BDG A;  3M8Z A;  2ANH A;  3UN3 A;  2QZU A;  2GA3 A;  1KHN A;  1E1Z P;  3UN2 A;  1SHQ A;  3UN5 A;  3ED4 A;  1ANI A;  1O99 A;  3CMR A;  3T01 A;  3D7S D;  3MK0 A;  1EW9 A;  1ED9 A;  1KH7 A;  1ELZ A;  1ELX A;  3IGY B;  1EQJ A;  1AJA A;  3M8Y A;  1KH9 A;  1P49 A;  3DPC A;  3T02 A;  1EW2 A;  1N2L A;  1KH4 A;  3T00 A;  1HJK A;  3SZY A;  1ALK A;  1ZED A;  3SZZ A;  1AJD A;  3M7V A;  1E3C P;  1HDH A;  4FDJ A;  1KHL A;  3BDF A;  3OT9 A;  1ZEF A;  2G9Y A;  3M8W A;  1N2K A;  2IFY A;  1AJB A;  3BDH A;  1ALI A;  1E33 P;  1KHJ A;  1AJC A;  3TX0 A;  3MK1 A;  3IGZ B;  3UO0 A;  1ZEB A;  1AUK A;  1Y7A A;  3MK2 A;  1ELY A; 
#chains in the KnotProt database with same CATH homology
 3TWZ A;  1FSU A;  1EI6 A;  1O98 A;  3NVL A;  1HQA A;  1E2S P;  1KH5 A;  1ANJ A;  1EJJ A;  1URA A;  1K7H A;  1Y6V A;  2GLQ A;  1URB A;  1ED8 A;  1ALJ A;  1EW8 A;  1KHK A;  3DYC A;  3BDG B;  1SHN A;  3UNY A;  4FDI A;  1B8J A;  3BDG A;  3M8Z A;  2ANH A;  3UN3 A;  2QZU A;  2GA3 A;  1KHN A;  1E1Z P;  3UN2 A;  1SHQ A;  3UN5 A;  3ED4 A;  1ANI A;  1O99 A;  3CMR A;  3T01 A;  3MK0 A;  1EW9 A;  1ED9 A;  1KH7 A;  1ELZ A;  1ELX A;  3IGY B;  1EQJ A;  1AJA A;  3M8Y A;  1KH9 A;  1P49 A;  3DPC A;  3T02 A;  1EW2 A;  1N2L A;  1KH4 A;  3T00 A;  1HJK A;  3SZY A;  1ALK A;  1ZED A;  3SZZ A;  1AJD A;  3M7V A;  1E3C P;  1HDH A;  4FDJ A;  1KHL A;  3BDF A;  3OT9 A;  1ZEF A;  2G9Y A;  3M8W A;  1N2K A;  2IFY A;  1AJB A;  3BDH A;  1ALI A;  1E33 P;  1KHJ A;  1AJC A;  3TX0 A;  3MK1 A;  3IGZ B;  3UO0 A;  1ZEB A;  1AUK A;  1Y7A A;  3MK2 A;  1ELY A; 
3M8YA 3M8ZA 3OT9A 3TWZA 3TX0A 3UO0A 4LR7A 4LR8A 4LREA
similar chains in the KnotProt database (40% sequence similarity)
None
similar chains in the pdb database (40% sequence similarity)

 
#similar chains in the KnotProt database (40% sequence similarity)
3M8Y A; 3M8Z A; 3OT9 A; 3TWZ A; 3TX0 A; 3UO0 A; 4LR7 A; 4LR8 A; 4LRE A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)


KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling
Application loaded.